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Please report broken links to
Christian.Radauer@meduniwien.ac.at
Suggestions for new entries are also welcome.

Protein structure

• Structure databases
• PDB Protein Data Bank @ RCSB
• PDBE - Protein Data Bank Europe
• Structural Classification of Proteins (SCOP)
  Classification of PDB entries into class, fold, superfamily, and family by manual inspection and automated methods
• CATH Protein Structure Classification
  Hierarchical classification of protein domain structures into four major levels, Class, Architecture, Topology and Homologous superfamily
• SDAP - Structural Database of Allergenic Proteins
  contains a database of allergen sequences and epitopes as well as several computational tools for sequence comparison, including search using the WHO criteria for allergen risk assessment.
• Homology modelling
• Swiss-Model
• 3D-Jigsaw
• CPHmodels
• Protein structure analysis
• CASTp Calculation of protein pockets and cavities
• ConSurf Identification of conserved functional regions in proteins
• GETAREA Calculation of solvent-accessible surface area
• ProSa-web
  Determine the quality of protein structures using knowledge-based potentials derived from known structures
• Epitopia Server for detection of immunogenic regions in protein structures or sequences
• DichroWeb on-line deconvolution for protein circular dichroism spectra
• DichroCalc Prediction of CD spectra from protein structures
• H++
  Calculation of pK values and titration curves based on protein structures