Christian's Bookmarks

Molecular biology databases

• Sequences
  • NCBI databases (GenBank etc.)
    Nucleotide, protein, taxonomy, PubMed etc.
  • Universial Protein Resource (UniProt)
• Structures
  • Protein Databank (PDB) @ RCSB
  • Protein Data Bank Europe (PDBe)
• Protein families
  • InterPro
    Classification of proteins by combining data from many other databases (Pfam, CDD, Prosite, CATH etc.)
  • Structural Classification of Proteins (SCOP)
    Not updated since 2022
  • CATH / Gene3D
    Structural classification of experimental structures and structures prediced by AlphaFold
• Biochemistry
  • ENZYME - Enzyme nomenclature database
  • Carbohydrate-Active enZYmes Database (CAZY)
  • MEROPS - The Peptidase Databse
    Hierarchical, structure-based classification of proteases and their inhibitors
• Taxonomy
  • UniProt Taxonomy Database
  • NCBI Taxonomy Databse
  • Catalogue of Life
    The most complete authoritative list of the world's species
  • Lifemap
    Interactive phylogenetic tree

Top